The Spectrogram¶

Calculating a Spectrogram from a TimeSeries¶

The time-frequency Spectrogram of a TimeSeries can be calculated using the spectrogram(). We can extend the original time-series example with calculation of a Spectrogram with a 20-second stride:

>>> from gwpy.timeseries import TimeSeries
>>> gwdata = TimeSeries.fetch('H1:LDAS-STRAIN', 'September 16 2010 06:40',
                              'September 16 2010 06:50')
>>> specgram = gwdata.spectrogram(20, fftlength=8, overlap=4) ** (1/2.)

Plotting a Spectrogram¶

Like the TimeSeries and FrequencySeries, the Spectrogram has a convenient plot() method, allowing us to view the data. We can extend the previous time-series example to include a plot:

from gwpy.timeseries import TimeSeries
gwdata = TimeSeries.fetch('H1:LDAS-STRAIN', 'September 16 2010 06:40',
                          'September 16 2010 06:50')
specgram = gwdata.spectrogram(20, fftlength=8, overlap=4) ** (1/2.)
plot = specgram.plot(norm='log', vmin=1e-23, vmax=1e-19)
ax = plot.gca()
ax.set_ylim(40, 4000)
ax.set_yscale('log')
plot.add_colorbar(label='Gravitational-wave strain [m/$\sqrt{\mathrm{Hz}}$]')
plot.show()

(Source code, png)

Spectrogram applications¶

Spectrogram reference¶

class gwpy.spectrogram.Spectrogram[source]¶

Bases: gwpy.data.array2d.Array2D

A 2D array holding a spectrogram of time-frequency data

Parameters:

value : array-like input data array unit : Unit, optional physical unit of these data epoch : LIGOTimeGPS, float, str GPS epoch associated with these data, any input parsable by to_gps is fine sample_rate : float, Quantity, optional, default: 1 the rate of samples per second (Hertz) times : array-like the complete array of GPS times accompanying the data for this series. This argument takes precedence over epoch and sample_rate so should be given in place of these if relevant, not alongside f0 : float, Quantity, optional, default: 0 starting frequency for these data df : float, Quantity, optional, default: 1 frequency resolution for these data frequencies : array-like the complete array of frequencies indexing the data. This argument takes precedence over f0 and df so should be given in place of these if relevant, not alongside name : str, optional, default: None descriptive title for this array channel : Channel, str source data stream for these data dtype : dtype, optional, default: None input data type copy : bool, optional, default: False choose to copy the input data to new memory subok : bool, optional, default: True allow passing of sub-classes by the array generator

Notes

Key methods:

read(*args, **kwargs)	Read in data
write(data, *args, **kwargs)	Write out data
plot(**kwargs)	Plot the data for this Spectrogram
zpk(zeros, poles, gain)	Filter this Spectrogram by applying a zero-pole-gain filter

Attributes Summary

T	Same as self.transpose(), except that self is returned if self.ndim < 2.
band	Frequency band described by this Spectrogram
base	Base object if memory is from some other object.
cgs	Returns a copy of the current Quantity instance with CGS units.
channel	Instrumental channel associated with these data
ctypes	An object to simplify the interaction of the array with the ctypes module.
data
df	Frequency spacing of this Spectrogram
dt	Time-spacing for this Spectrogram
dtype	Data-type of the array’s elements.
dx	X-axis sample separation
dy
epoch	Starting GPS epoch for this Spectrogram
equivalencies	A list of equivalencies that will be applied by default during unit conversions.
f0	Starting frequency for this Spectrogram
flags	Information about the memory layout of the array.
flat	A 1-D iterator over the Quantity array.
frequencies	Series of frequencies for this Spectrogram
imag	The imaginary part of the array.
info	Container for meta information like name, description, format.
isscalar	True if the value of this quantity is a scalar, or False if it is an array-like object.
itemsize	Length of one array element in bytes.
name	Name for this data set
nbytes	Total bytes consumed by the elements of the array.
ndim	Number of array dimensions.
real	The real part of the array.
shape	Tuple of array dimensions.
si	Returns a copy of the current Quantity instance with SI units.
size	Number of elements in the array.
span	GPS [start, stop) span for this Spectrogram
strides	Tuple of bytes to step in each dimension when traversing an array.
times	Series of GPS times for each sample
unit	The physical unit of these data
value	The numerical value of this quantity.
x0	X-axis value of the first data point
xindex	Positions of the data on the x-axis
xspan	X-axis [low, high) segment encompassed by these data
xunit	Unit of x-axis index
y0	Y-axis value of the first data point
yindex	Positions of the data on the y-axis
yspan	Y-axis [low, high) segment encompassed by these data
yunit	Unit of y-axis index

Methods Summary

all([axis, out, keepdims])	Returns True if all elements evaluate to True.
any([axis, out, keepdims])	Returns True if any of the elements of a evaluate to True.
append(other[, gap, inplace, pad, resize])	Connect another series onto the end of the current one.
argmax([axis, out])	Return indices of the maximum values along the given axis.
argmin([axis, out])	Return indices of the minimum values along the given axis of a.
argpartition(kth[, axis, kind, order])	Returns the indices that would partition this array.
argsort([axis, kind, order])	Returns the indices that would sort this array.
astype(dtype[, order, casting, subok, copy])	Copy of the array, cast to a specified type.
byteswap(inplace)	Swap the bytes of the array elements
choose(choices[, out, mode])	Use an index array to construct a new array from a set of choices.
clip([min, max, out])	Return an array whose values are limited to [min, max].
compress(condition[, axis, out])	Return selected slices of this array along given axis.
conj()	Complex-conjugate all elements.
conjugate()	Return the complex conjugate, element-wise.
copy([order])	Return a copy of the array.
copy_metadata()	Return a deepcopy of the metadata for this array
crop([start, end, copy])	Crop this series to the given x-axis extent.
crop_frequencies([low, high, copy])	Crop this Spectrogram to the specified frequencies
cumprod([axis, dtype, out])	Return the cumulative product of the elements along the given axis.
cumsum([axis, dtype, out])	Return the cumulative sum of the elements along the given axis.
decompose([bases])	Generates a new Quantity with the units decomposed.
diagonal([offset, axis1, axis2])	Return specified diagonals.
diff([n, axis])	Calculate the n-th discrete difference along given axis.
dot(b[, out])	Dot product of two arrays.
dump(file)	Dump a pickle of the array to the specified file.
dumps()	Returns the pickle of the array as a string.
ediff1d([to_end, to_begin])
fill(value)	Fill the array with a scalar value.
filter(*filt, **kwargs)	Apply the given filter to this Spectrogram.
flatten([order])	Return a copy of the array collapsed into one dimension.
from_hdf5(*args, **kwargs)	Read an array from the given HDF file.
from_spectra(*spectra, **kwargs)	Build a new Spectrogram from a list of spectra.
getfield(dtype[, offset])	Returns a field of the given array as a certain type.
insert(obj, values[, axis])	Insert values along the given axis before the given indices and return a new Quantity object.
is_compatible(other)	Check whether metadata attributes for self and other match.
is_contiguous(other[, tol])	Check whether other is contiguous with self.
item(*args)	Copy an element of an array to a standard Python scalar and return it.
itemset(*args)	Insert scalar into an array (scalar is cast to array’s dtype, if possible)
max([axis, out])	Return the maximum along a given axis.
mean([axis, dtype, out, keepdims])	Returns the average of the array elements along given axis.
median([axis])	Compute the median along the specified axis.
min([axis, out, keepdims])	Return the minimum along a given axis.
nansum([axis, out, keepdims])
newbyteorder([new_order])	Return the array with the same data viewed with a different byte order.
nonzero()	Return the indices of the elements that are non-zero.
override_unit(unit[, parse_strict])	Forcefully reset the unit of these data
pad(pad_width, **kwargs)	Pad this series to a new size
partition(kth[, axis, kind, order])	Rearranges the elements in the array in such a way that value of the element in kth position is in the position it would be in a sorted array.
percentile(percentile)	Calculate a given spectral percentile for this Spectrogram.
plot(**kwargs)	Plot the data for this Spectrogram
prepend(other[, gap, inplace, pad, resize])	Connect another series onto the start of the current one.
prod([axis, dtype, out, keepdims])	Return the product of the array elements over the given axis
ptp([axis, out])	Peak to peak (maximum - minimum) value along a given axis.
put(indices, values[, mode])	Set a.flat[n] = values[n] for all n in indices.
ratio(operand)	Calculate the ratio of this Spectrogram against a reference
ravel([order])	Return a flattened array.
read(*args, **kwargs)	Read in data
repeat(repeats[, axis])	Repeat elements of an array.
reshape(shape[, order])	Returns an array containing the same data with a new shape.
resize(new_shape[, refcheck])	Change shape and size of array in-place.
round([decimals, out])	Return a with each element rounded to the given number of decimals.
searchsorted(v[, side, sorter])	Find indices where elements of v should be inserted in a to maintain order.
setfield(val, dtype[, offset])	Put a value into a specified place in a field defined by a data-type.
setflags([write, align, uic])	Set array flags WRITEABLE, ALIGNED, and UPDATEIFCOPY, respectively.
sort([axis, kind, order])	Sort an array, in-place.
squeeze([axis])	Remove single-dimensional entries from the shape of a.
std([axis, dtype, out, ddof, keepdims])	Returns the standard deviation of the array elements along given axis.
sum([axis, dtype, out, keepdims])	Return the sum of the array elements over the given axis.
swapaxes(axis1, axis2)	Return a view of the array with axis1 and axis2 interchanged.
take(indices[, axis, out, mode])	Return an array formed from the elements of a at the given indices.
to(unit[, equivalencies])	Returns a new Quantity object with the specified units.
to_hdf5(*args, **kwargs)	Convert this array to a h5py.Dataset.
tobytes([order])	Construct Python bytes containing the raw data bytes in the array.
tofile(fid[, sep, format])	Write array to a file as text or binary (default).
tolist()	Return the array as a (possibly nested) list.
tostring([order])	Construct Python bytes containing the raw data bytes in the array.
trace([offset, axis1, axis2, dtype, out])	Return the sum along diagonals of the array.
transpose(*axes)	Returns a view of the array with axes transposed.
update(other[, inplace])	Update this series by appending new data from an other and dropping the same amount of data off the start.
value_at(x, y)	Return the value of this Series at the given (x, y) coordinates
var([axis, dtype, out, ddof, keepdims])	Returns the variance of the array elements, along given axis.
variance([bins, low, high, nbins, log, ...])	Calculate the SpectralVariance of this Spectrogram.
view([dtype, type])	New view of array with the same data.
write(data, *args, **kwargs)	Write out data
zip()	Zip the xindex and value arrays of this Series
zpk(zeros, poles, gain)	Filter this Spectrogram by applying a zero-pole-gain filter

Attributes Documentation

T¶

Same as self.transpose(), except that self is returned if self.ndim < 2.

Examples

>>> x = np.array([[1.,2.],[3.,4.]])
>>> x
array([[ 1.,  2.],
       [ 3.,  4.]])
>>> x.T
array([[ 1.,  3.],
       [ 2.,  4.]])
>>> x = np.array([1.,2.,3.,4.])
>>> x
array([ 1.,  2.,  3.,  4.])
>>> x.T
array([ 1.,  2.,  3.,  4.])

band¶

Frequency band described by this Spectrogram

base¶

Base object if memory is from some other object.

Examples

The base of an array that owns its memory is None:

>>> x = np.array([1,2,3,4])
>>> x.base is None
True

Slicing creates a view, whose memory is shared with x:

>>> y = x[2:]
>>> y.base is x
True

cgs¶

Returns a copy of the current Quantity instance with CGS units. The value of the resulting object will be scaled.

channel¶

Instrumental channel associated with these data

Type:	Channel

ctypes¶

An object to simplify the interaction of the array with the ctypes module.

This attribute creates an object that makes it easier to use arrays when calling shared libraries with the ctypes module. The returned object has, among others, data, shape, and strides attributes (see Notes below) which themselves return ctypes objects that can be used as arguments to a shared library.

Parameters:	None :
Returns:	c : Python object Possessing attributes data, shape, strides, etc.

See also

numpy.ctypeslib

Notes

Below are the public attributes of this object which were documented in “Guide to NumPy” (we have omitted undocumented public attributes, as well as documented private attributes):

• data: A pointer to the memory area of the array as a Python integer. This memory area may contain data that is not aligned, or not in correct byte-order. The memory area may not even be writeable. The array flags and data-type of this array should be respected when passing this attribute to arbitrary C-code to avoid trouble that can include Python crashing. User Beware! The value of this attribute is exactly the same as self._array_interface_[‘data’][0].
• shape (c_intp*self.ndim): A ctypes array of length self.ndim where the basetype is the C-integer corresponding to dtype(‘p’) on this platform. This base-type could be c_int, c_long, or c_longlong depending on the platform. The c_intp type is defined accordingly in numpy.ctypeslib. The ctypes array contains the shape of the underlying array.
• strides (c_intp*self.ndim): A ctypes array of length self.ndim where the basetype is the same as for the shape attribute. This ctypes array contains the strides information from the underlying array. This strides information is important for showing how many bytes must be jumped to get to the next element in the array.
• data_as(obj): Return the data pointer cast to a particular c-types object. For example, calling self._as_parameter_ is equivalent to self.data_as(ctypes.c_void_p). Perhaps you want to use the data as a pointer to a ctypes array of floating-point data: self.data_as(ctypes.POINTER(ctypes.c_double)).
• shape_as(obj): Return the shape tuple as an array of some other c-types type. For example: self.shape_as(ctypes.c_short).
• strides_as(obj): Return the strides tuple as an array of some other c-types type. For example: self.strides_as(ctypes.c_longlong).

Be careful using the ctypes attribute - especially on temporary arrays or arrays constructed on the fly. For example, calling (a+b).ctypes.data_as(ctypes.c_void_p) returns a pointer to memory that is invalid because the array created as (a+b) is deallocated before the next Python statement. You can avoid this problem using either c=a+b or ct=(a+b).ctypes. In the latter case, ct will hold a reference to the array until ct is deleted or re-assigned.

If the ctypes module is not available, then the ctypes attribute of array objects still returns something useful, but ctypes objects are not returned and errors may be raised instead. In particular, the object will still have the as parameter attribute which will return an integer equal to the data attribute.

Examples

>>> import ctypes
>>> x
array([[0, 1],
       [2, 3]])
>>> x.ctypes.data
30439712
>>> x.ctypes.data_as(ctypes.POINTER(ctypes.c_long))
<ctypes.LP_c_long object at 0x01F01300>
>>> x.ctypes.data_as(ctypes.POINTER(ctypes.c_long)).contents
c_long(0)
>>> x.ctypes.data_as(ctypes.POINTER(ctypes.c_longlong)).contents
c_longlong(4294967296L)
>>> x.ctypes.shape
<numpy.core._internal.c_long_Array_2 object at 0x01FFD580>
>>> x.ctypes.shape_as(ctypes.c_long)
<numpy.core._internal.c_long_Array_2 object at 0x01FCE620>
>>> x.ctypes.strides
<numpy.core._internal.c_long_Array_2 object at 0x01FCE620>
>>> x.ctypes.strides_as(ctypes.c_longlong)
<numpy.core._internal.c_longlong_Array_2 object at 0x01F01300>

data¶

df¶

Frequency spacing of this Spectrogram

Type:	Quantity in Hertz

dt¶

Time-spacing for this Spectrogram

:type:`~astropy.units.Quantity` in seconds

dtype¶

Data-type of the array’s elements.

Parameters:	None :
Returns:	d : numpy dtype object

See also

numpy.dtype

Examples

>>> x
array([[0, 1],
       [2, 3]])
>>> x.dtype
dtype('int32')
>>> type(x.dtype)
<type 'numpy.dtype'>

dx¶

X-axis sample separation

Type:	Quantity scalar

dy¶

epoch¶

Starting GPS epoch for this Spectrogram

:type:`~gwpy.segments.Segment`

equivalencies¶

A list of equivalencies that will be applied by default during unit conversions.

f0¶

Starting frequency for this Spectrogram

Type:	Quantity in Hertz

flags¶

Information about the memory layout of the array.

Notes

The flags object can be accessed dictionary-like (as in a.flags['WRITEABLE']), or by using lowercased attribute names (as in a.flags.writeable). Short flag names are only supported in dictionary access.

Only the UPDATEIFCOPY, WRITEABLE, and ALIGNED flags can be changed by the user, via direct assignment to the attribute or dictionary entry, or by calling ndarray.setflags.

The array flags cannot be set arbitrarily:

• UPDATEIFCOPY can only be set False.
• ALIGNED can only be set True if the data is truly aligned.
• WRITEABLE can only be set True if the array owns its own memory or the ultimate owner of the memory exposes a writeable buffer interface or is a string.

Arrays can be both C-style and Fortran-style contiguous simultaneously. This is clear for 1-dimensional arrays, but can also be true for higher dimensional arrays.

Even for contiguous arrays a stride for a given dimension arr.strides[dim] may be arbitrary if arr.shape[dim] == 1 or the array has no elements. It does not generally hold that self.strides[-1] == self.itemsize for C-style contiguous arrays or self.strides[0] == self.itemsize for Fortran-style contiguous arrays is true.

Attributes

flat¶

A 1-D iterator over the Quantity array.

This returns a QuantityIterator instance, which behaves the same as the flatiter instance returned by flat, and is similar to, but not a subclass of, Python’s built-in iterator object.

frequencies¶

Series of frequencies for this Spectrogram

imag¶

The imaginary part of the array.

Examples

>>> x = np.sqrt([1+0j, 0+1j])
>>> x.imag
array([ 0.        ,  0.70710678])
>>> x.imag.dtype
dtype('float64')

info¶

Container for meta information like name, description, format. This is required when the object is used as a mixin column within a table, but can be used as a general way to store meta information.

isscalar¶

True if the value of this quantity is a scalar, or False if it is an array-like object.

Note

This is subtly different from numpy.isscalar in that numpy.isscalar returns False for a zero-dimensional array (e.g. np.array(1)), while this is True for quantities, since quantities cannot represent true numpy scalars.

itemsize¶

Length of one array element in bytes.

Examples

>>> x = np.array([1,2,3], dtype=np.float64)
>>> x.itemsize
8
>>> x = np.array([1,2,3], dtype=np.complex128)
>>> x.itemsize
16

name¶

Name for this data set

Type:	str

nbytes¶

Total bytes consumed by the elements of the array.

Notes

Does not include memory consumed by non-element attributes of the array object.

Examples

>>> x = np.zeros((3,5,2), dtype=np.complex128)
>>> x.nbytes
480
>>> np.prod(x.shape) * x.itemsize
480

ndim¶

Number of array dimensions.

Examples

>>> x = np.array([1, 2, 3])
>>> x.ndim
1
>>> y = np.zeros((2, 3, 4))
>>> y.ndim
3

real¶

The real part of the array.

See also

numpy.real

equivalent function

Examples

>>> x = np.sqrt([1+0j, 0+1j])
>>> x.real
array([ 1.        ,  0.70710678])
>>> x.real.dtype
dtype('float64')

shape¶

Tuple of array dimensions.

Notes

May be used to “reshape” the array, as long as this would not require a change in the total number of elements

Examples

>>> x = np.array([1, 2, 3, 4])
>>> x.shape
(4,)
>>> y = np.zeros((2, 3, 4))
>>> y.shape
(2, 3, 4)
>>> y.shape = (3, 8)
>>> y
array([[ 0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.],
       [ 0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.],
       [ 0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.]])
>>> y.shape = (3, 6)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ValueError: total size of new array must be unchanged

si¶

Returns a copy of the current Quantity instance with SI units. The value of the resulting object will be scaled.

size¶

Number of elements in the array.

Equivalent to np.prod(a.shape), i.e., the product of the array’s dimensions.

Examples

>>> x = np.zeros((3, 5, 2), dtype=np.complex128)
>>> x.size
30
>>> np.prod(x.shape)
30

span¶

GPS [start, stop) span for this Spectrogram

:type:`~gwpy.segments.Segment`

strides¶

Tuple of bytes to step in each dimension when traversing an array.

The byte offset of element (i[0], i[1], ..., i[n]) in an array a is:

offset = sum(np.array(i) * a.strides)

A more detailed explanation of strides can be found in the “ndarray.rst” file in the NumPy reference guide.

See also

numpy.lib.stride_tricks.as_strided

Notes

Imagine an array of 32-bit integers (each 4 bytes):

x = np.array([[0, 1, 2, 3, 4],
              [5, 6, 7, 8, 9]], dtype=np.int32)

This array is stored in memory as 40 bytes, one after the other (known as a contiguous block of memory). The strides of an array tell us how many bytes we have to skip in memory to move to the next position along a certain axis. For example, we have to skip 4 bytes (1 value) to move to the next column, but 20 bytes (5 values) to get to the same position in the next row. As such, the strides for the array x will be (20, 4).

Examples

>>> y = np.reshape(np.arange(2*3*4), (2,3,4))
>>> y
array([[[ 0,  1,  2,  3],
        [ 4,  5,  6,  7],
        [ 8,  9, 10, 11]],
       [[12, 13, 14, 15],
        [16, 17, 18, 19],
        [20, 21, 22, 23]]])
>>> y.strides
(48, 16, 4)
>>> y[1,1,1]
17
>>> offset=sum(y.strides * np.array((1,1,1)))
>>> offset/y.itemsize
17

>>> x = np.reshape(np.arange(5*6*7*8), (5,6,7,8)).transpose(2,3,1,0)
>>> x.strides
(32, 4, 224, 1344)
>>> i = np.array([3,5,2,2])
>>> offset = sum(i * x.strides)
>>> x[3,5,2,2]
813
>>> offset / x.itemsize
813

times¶

Series of GPS times for each sample

unit¶

The physical unit of these data

Type:	UnitBase

value¶

The numerical value of this quantity.

x0¶

X-axis value of the first data point

Type:	Quantity scalar

xindex¶

Positions of the data on the x-axis

Type:	Quantity array

xspan¶

X-axis [low, high) segment encompassed by these data

Type:	Segment

xunit¶

Unit of x-axis index

Type:	Unit

y0¶

Y-axis value of the first data point

Type:	Quantity scalar

yindex¶

Positions of the data on the y-axis

Type:	Quantity array

yspan¶

Y-axis [low, high) segment encompassed by these data

Type:	Segment

yunit¶

Unit of y-axis index

Type:	Unit

Methods Documentation

all(axis=None, out=None, keepdims=False)¶

Returns True if all elements evaluate to True.

Refer to numpy.all for full documentation.

See also

numpy.all

equivalent function

any(axis=None, out=None, keepdims=False)¶

Returns True if any of the elements of a evaluate to True.

Refer to numpy.any for full documentation.

See also

numpy.any

equivalent function

append(other, gap='raise', inplace=True, pad=0.0, resize=True)[source]¶

Connect another series onto the end of the current one.

Parameters:

other : Series another series of the same type to connect to this one gap : str, optional, default: 'raise' action to perform if there’s a gap between the other series and this one. One of 'raise' - raise an Exception 'ignore' - remove gap and join data 'pad' - pad gap with zeros inplace : bool, optional, default: True perform operation in-place, modifying current Series, otherwise copy data and return new Series Warning inplace append bypasses the reference check in numpy.ndarray.resize, so be carefully to only use this for arrays that haven’t been sharing their memory! pad : float, optional, default: 0.0 value with which to pad discontiguous series resize : bool, optional, default: True resize this array to accommodate new data, otherwise shift the old data to the left (potentially falling off the start) and put the new data in at the end

Returns:

series : Series a new series containing joined data sets

argmax(axis=None, out=None)¶

Return indices of the maximum values along the given axis.

Refer to numpy.argmax for full documentation.

See also

numpy.argmax

equivalent function

argmin(axis=None, out=None)¶

Return indices of the minimum values along the given axis of a.

Refer to numpy.argmin for detailed documentation.

See also

numpy.argmin

equivalent function

argpartition(kth, axis=-1, kind='introselect', order=None)¶

Returns the indices that would partition this array.

Refer to numpy.argpartition for full documentation.

New in version 1.8.0.

See also

numpy.argpartition

equivalent function

argsort(axis=-1, kind='quicksort', order=None)¶

Returns the indices that would sort this array.

Refer to numpy.argsort for full documentation.

See also

numpy.argsort

equivalent function

astype(dtype, order='K', casting='unsafe', subok=True, copy=True)¶

Copy of the array, cast to a specified type.

Parameters:	dtype : str or dtype Typecode or data-type to which the array is cast. order : {‘C’, ‘F’, ‘A’, ‘K’}, optional Controls the memory layout order of the result. ‘C’ means C order, ‘F’ means Fortran order, ‘A’ means ‘F’ order if all the arrays are Fortran contiguous, ‘C’ order otherwise, and ‘K’ means as close to the order the array elements appear in memory as possible. Default is ‘K’. casting : {‘no’, ‘equiv’, ‘safe’, ‘same_kind’, ‘unsafe’}, optional Controls what kind of data casting may occur. Defaults to ‘unsafe’ for backwards compatibility. ‘no’ means the data types should not be cast at all. ‘equiv’ means only byte-order changes are allowed. ‘safe’ means only casts which can preserve values are allowed. ‘same_kind’ means only safe casts or casts within a kind, like float64 to float32, are allowed. ‘unsafe’ means any data conversions may be done. subok : bool, optional If True, then sub-classes will be passed-through (default), otherwise the returned array will be forced to be a base-class array. copy : bool, optional By default, astype always returns a newly allocated array. If this is set to false, and the dtype, order, and subok requirements are satisfied, the input array is returned instead of a copy.
Returns:	arr_t : ndarray Unless copy is False and the other conditions for returning the input array are satisfied (see description for copy input parameter), arr_t is a new array of the same shape as the input array, with dtype, order given by dtype, order.
Raises:	ComplexWarning : When casting from complex to float or int. To avoid this, one should use a.real.astype(t).

Notes

Starting in NumPy 1.9, astype method now returns an error if the string dtype to cast to is not long enough in ‘safe’ casting mode to hold the max value of integer/float array that is being casted. Previously the casting was allowed even if the result was truncated.

Examples

>>> x = np.array([1, 2, 2.5])
>>> x
array([ 1. ,  2. ,  2.5])

>>> x.astype(int)
array([1, 2, 2])

byteswap(inplace)¶

Swap the bytes of the array elements

Toggle between low-endian and big-endian data representation by returning a byteswapped array, optionally swapped in-place.

Parameters:	inplace : bool, optional If True, swap bytes in-place, default is False.
Returns:	out : ndarray The byteswapped array. If inplace is True, this is a view to self.

Examples

>>> A = np.array([1, 256, 8755], dtype=np.int16)
>>> map(hex, A)
['0x1', '0x100', '0x2233']
>>> A.byteswap(True)
array([  256,     1, 13090], dtype=int16)
>>> map(hex, A)
['0x100', '0x1', '0x3322']

Arrays of strings are not swapped

>>> A = np.array(['ceg', 'fac'])
>>> A.byteswap()
array(['ceg', 'fac'],
      dtype='|S3')

choose(choices, out=None, mode='raise')¶

Use an index array to construct a new array from a set of choices.

Refer to numpy.choose for full documentation.

See also

numpy.choose

equivalent function

clip(min=None, max=None, out=None)¶

Return an array whose values are limited to [min, max]. One of max or min must be given.

Refer to numpy.clip for full documentation.

See also

numpy.clip

equivalent function

compress(condition, axis=None, out=None)¶

Return selected slices of this array along given axis.

Refer to numpy.compress for full documentation.

See also

numpy.compress

equivalent function

conj()¶

Complex-conjugate all elements.

Refer to numpy.conjugate for full documentation.

See also

numpy.conjugate

equivalent function

conjugate()¶

Return the complex conjugate, element-wise.

Refer to numpy.conjugate for full documentation.

See also

numpy.conjugate

equivalent function

copy(order='C')[source]¶

Return a copy of the array.

Parameters:	order : {‘C’, ‘F’, ‘A’, ‘K’}, optional Controls the memory layout of the copy. ‘C’ means C-order, ‘F’ means F-order, ‘A’ means ‘F’ if a is Fortran contiguous, ‘C’ otherwise. ‘K’ means match the layout of a as closely as possible. (Note that this function and :func:numpy.copy are very similar, but have different default values for their order= arguments.)

See also

numpy.copy, numpy.copyto

Examples

>>> x = np.array([[1,2,3],[4,5,6]], order='F')

>>> y = x.copy()

>>> x.fill(0)

>>> x
array([[0, 0, 0],
       [0, 0, 0]])

>>> y
array([[1, 2, 3],
       [4, 5, 6]])

>>> y.flags['C_CONTIGUOUS']
True

copy_metadata()[source]¶

Return a deepcopy of the metadata for this array

crop(start=None, end=None, copy=False)[source]¶

Crop this series to the given x-axis extent.

Parameters:	start : float, optional lower limit of x-axis to crop to, defaults to current x0 end : float, optional upper limit of x-axis to crop to, defaults to current series end copy : bool, optional, default: False copy the input data to fresh memory, otherwise return a view
Returns:	series : Series A new series with a sub-set of the input data

Notes

If either start or end are outside of the original Series span, warnings will be printed and the limits will be restricted to the xspan

crop_frequencies(low=None, high=None, copy=False)[source]¶

Crop this Spectrogram to the specified frequencies

Parameters:	low : float lower frequency bound for cropped Spectrogram high : float upper frequency bound for cropped Spectrogram copy : bool if False return a view of the original data, otherwise create a fresh memory copy
Returns:	spec : Spectrogram A new Spectrogram with a subset of data from the frequency axis

cumprod(axis=None, dtype=None, out=None)¶

Return the cumulative product of the elements along the given axis.

Refer to numpy.cumprod for full documentation.

See also

numpy.cumprod

equivalent function

cumsum(axis=None, dtype=None, out=None)¶

Return the cumulative sum of the elements along the given axis.

Refer to numpy.cumsum for full documentation.

See also

numpy.cumsum

equivalent function

decompose(bases=[])¶

Generates a new Quantity with the units decomposed. Decomposed units have only irreducible units in them (see astropy.units.UnitBase.decompose).

Parameters:	bases : sequence of UnitBase, optional The bases to decompose into. When not provided, decomposes down to any irreducible units. When provided, the decomposed result will only contain the given units. This will raises a UnitsError if it’s not possible to do so.
Returns:	newq : Quantity A new object equal to this quantity with units decomposed.

diagonal(offset=0, axis1=0, axis2=1)¶

Return specified diagonals. In NumPy 1.9 the returned array is a read-only view instead of a copy as in previous NumPy versions. In a future version the read-only restriction will be removed.

Refer to numpy.diagonal() for full documentation.

See also

numpy.diagonal

equivalent function

diff(n=1, axis=-1)[source]¶

Calculate the n-th discrete difference along given axis.

The first difference is given by out[n] = a[n+1] - a[n] along the given axis, higher differences are calculated by using diff recursively.

Parameters:	a : array_like Input array n : int, optional The number of times values are differenced. axis : int, optional The axis along which the difference is taken, default is the last axis.
Returns:	diff : ndarray The n-th differences. The shape of the output is the same as a except along axis where the dimension is smaller by n. . :

Examples

>>> x = np.array([1, 2, 4, 7, 0])
>>> np.diff(x)
array([ 1,  2,  3, -7])
>>> np.diff(x, n=2)
array([  1,   1, -10])

>>> x = np.array([[1, 3, 6, 10], [0, 5, 6, 8]])
>>> np.diff(x)
array([[2, 3, 4],
       [5, 1, 2]])
>>> np.diff(x, axis=0)
array([[-1,  2,  0, -2]])

dot(b, out=None)¶

Dot product of two arrays.

Refer to numpy.dot for full documentation.

See also

numpy.dot

equivalent function

Examples

>>> a = np.eye(2)
>>> b = np.ones((2, 2)) * 2
>>> a.dot(b)
array([[ 2.,  2.],
       [ 2.,  2.]])

This array method can be conveniently chained:

>>> a.dot(b).dot(b)
array([[ 8.,  8.],
       [ 8.,  8.]])

dump(file)¶

Dump a pickle of the array to the specified file. The array can be read back with pickle.load or numpy.load.

Parameters:	file : str A string naming the dump file.

dumps()[source]¶

Returns the pickle of the array as a string. pickle.loads or numpy.loads will convert the string back to an array.

Parameters:	None :

ediff1d(to_end=None, to_begin=None)¶

fill(value)¶

Fill the array with a scalar value.

Parameters:	value : scalar All elements of a will be assigned this value.

Examples

>>> a = np.array([1, 2])
>>> a.fill(0)
>>> a
array([0, 0])
>>> a = np.empty(2)
>>> a.fill(1)
>>> a
array([ 1.,  1.])

filter(*filt, **kwargs)[source]¶

Apply the given filter to this Spectrogram.

Recognised filter arguments are converted into the standard (numerator, denominator) representation before being applied to this Spectrogram.

Note

Unlike the related TimeSeries.filter method, here all frequency information (e.g. frequencies of poles or zeros in a ZPK) is assumed to be in Hertz.

Parameters:	*filt : one of: scipy.signal.lti (numerator, denominator) polynomials (zeros, poles, gain) (A, B, C, D) ‘state-space’ representation
Returns:	result : Spectrogram the filtered version of the input Spectrogram
Raises:	ValueError : If filt arguments cannot be interpreted properly

See also

FrequencySeries.zpk

for information on filtering in zero-pole-gain format

scipy.signal.zpk2tf

for details on converting (zeros, poles, gain) into transfer function format

scipy.signal.ss2tf

for details on converting (A, B, C, D) to transfer function format

scipy.signal.freqs

for details on the filtering calculation

flatten(order='C')¶

Return a copy of the array collapsed into one dimension.

Parameters:	order : {‘C’, ‘F’, ‘A’, ‘K’}, optional ‘C’ means to flatten in row-major (C-style) order. ‘F’ means to flatten in column-major (Fortran- style) order. ‘A’ means to flatten in column-major order if a is Fortran contiguous in memory, row-major order otherwise. ‘K’ means to flatten a in the order the elements occur in memory. The default is ‘C’.
Returns:	y : ndarray A copy of the input array, flattened to one dimension.

See also

ravel

Return a flattened array.

flat

A 1-D flat iterator over the array.

Examples

>>> a = np.array([[1,2], [3,4]])
>>> a.flatten()
array([1, 2, 3, 4])
>>> a.flatten('F')
array([1, 3, 2, 4])

from_hdf5(*args, **kwargs)[source]¶

Read an array from the given HDF file.

This method has been deprecated in favour of the unified I/O method:

Class.write(..., format=’hdf5’)

classmethod from_spectra(*spectra, **kwargs)[source]¶

Build a new Spectrogram from a list of spectra.

Parameters:	*spectra : any number of FrequencySeries series dt : float, Quantity, optional stride between given spectra
Returns:	Spectrogram : a new Spectrogram from a vertical stacking of the spectra The new object takes the metadata from the first given FrequencySeries if not given explicitly

Notes

Each FrequencySeries passed to this constructor must be the same length.

getfield(dtype, offset=0)¶

Returns a field of the given array as a certain type.

A field is a view of the array data with a given data-type. The values in the view are determined by the given type and the offset into the current array in bytes. The offset needs to be such that the view dtype fits in the array dtype; for example an array of dtype complex128 has 16-byte elements. If taking a view with a 32-bit integer (4 bytes), the offset needs to be between 0 and 12 bytes.

Parameters:	dtype : str or dtype The data type of the view. The dtype size of the view can not be larger than that of the array itself. offset : int Number of bytes to skip before beginning the element view.

Examples

>>> x = np.diag([1.+1.j]*2)
>>> x[1, 1] = 2 + 4.j
>>> x
array([[ 1.+1.j,  0.+0.j],
       [ 0.+0.j,  2.+4.j]])
>>> x.getfield(np.float64)
array([[ 1.,  0.],
       [ 0.,  2.]])

By choosing an offset of 8 bytes we can select the complex part of the array for our view:

>>> x.getfield(np.float64, offset=8)
array([[ 1.,  0.],
   [ 0.,  4.]])

insert(obj, values, axis=None)¶

Insert values along the given axis before the given indices and return a new Quantity object.

This is a thin wrapper around the numpy.insert function.

Parameters:

obj : int, slice or sequence of ints Object that defines the index or indices before which values is inserted. values : array-like Values to insert. If the type of values is different from that of quantity, values is converted to the matching type. values should be shaped so that it can be broadcast appropriately The unit of values must be consistent with this quantity. axis : int, optional Axis along which to insert values. If axis is None then the quantity array is flattened before insertion.

Returns:

out : Quantity A copy of quantity with values inserted. Note that the insertion does not occur in-place: a new quantity array is returned.

Examples

>>> import astropy.units as u
>>> q = [1, 2] * u.m
>>> q.insert(0, 50 * u.cm)
<Quantity [ 0.5,  1.,  2.] m>

>>> q = [[1, 2], [3, 4]] * u.m
>>> q.insert(1, [10, 20] * u.m, axis=0)
<Quantity [[  1.,  2.],
           [ 10., 20.],
           [  3.,  4.]] m>

>>> q.insert(1, 10 * u.m, axis=1)
<Quantity [[  1., 10.,  2.],
           [  3., 10.,  4.]] m>

is_compatible(other)[source]¶

Check whether metadata attributes for self and other match.

is_contiguous(other, tol=3.814697265625e-06)[source]¶

Check whether other is contiguous with self.

Parameters:	other : Series, numpy.ndarray another series of the same type to test for contiguity tol : float, optional the numerical tolerance of the test
Returns:	1 : if other is contiguous with this series, i.e. would attach seamlessly onto the end -1 : if other is anti-contiguous with this seires, i.e. would attach seamlessly onto the start 0 : if other is completely dis-contiguous with thie series

Notes

if a raw numpy.ndarray is passed as other, with no metadata, then the contiguity check will always pass

item(*args)¶

Copy an element of an array to a standard Python scalar and return it.

Parameters:

*args : Arguments (variable number and type) none: in this case, the method only works for arrays with one element (a.size == 1), which element is copied into a standard Python scalar object and returned. int_type: this argument is interpreted as a flat index into the array, specifying which element to copy and return. tuple of int_types: functions as does a single int_type argument, except that the argument is interpreted as an nd-index into the array.

Returns:

z : Standard Python scalar object A copy of the specified element of the array as a suitable Python scalar

Notes

When the data type of a is longdouble or clongdouble, item() returns a scalar array object because there is no available Python scalar that would not lose information. Void arrays return a buffer object for item(), unless fields are defined, in which case a tuple is returned.

item is very similar to a[args], except, instead of an array scalar, a standard Python scalar is returned. This can be useful for speeding up access to elements of the array and doing arithmetic on elements of the array using Python’s optimized math.

Examples

>>> x = np.random.randint(9, size=(3, 3))
>>> x
array([[3, 1, 7],
       [2, 8, 3],
       [8, 5, 3]])
>>> x.item(3)
2
>>> x.item(7)
5
>>> x.item((0, 1))
1
>>> x.item((2, 2))
3

itemset(*args)¶

Insert scalar into an array (scalar is cast to array’s dtype, if possible)

There must be at least 1 argument, and define the last argument as item. Then, a.itemset(*args) is equivalent to but faster than a[args] = item. The item should be a scalar value and args must select a single item in the array a.

Parameters:	*args : Arguments If one argument: a scalar, only used in case a is of size 1. If two arguments: the last argument is the value to be set and must be a scalar, the first argument specifies a single array element location. It is either an int or a tuple.

Notes

Compared to indexing syntax, itemset provides some speed increase for placing a scalar into a particular location in an ndarray, if you must do this. However, generally this is discouraged: among other problems, it complicates the appearance of the code. Also, when using itemset (and item) inside a loop, be sure to assign the methods to a local variable to avoid the attribute look-up at each loop iteration.

Examples

>>> x = np.random.randint(9, size=(3, 3))
>>> x
array([[3, 1, 7],
       [2, 8, 3],
       [8, 5, 3]])
>>> x.itemset(4, 0)
>>> x.itemset((2, 2), 9)
>>> x
array([[3, 1, 7],
       [2, 0, 3],
       [8, 5, 9]])

max(axis=None, out=None)¶

Return the maximum along a given axis.

Refer to numpy.amax for full documentation.

See also

numpy.amax

equivalent function

mean(axis=None, dtype=None, out=None, keepdims=False)¶

Returns the average of the array elements along given axis.

Refer to numpy.mean for full documentation.

See also

numpy.mean

equivalent function

median(axis=None, **kwargs)[source]¶

Compute the median along the specified axis.

Returns the median of the array elements.

Parameters:

a : array_like Input array or object that can be converted to an array. axis : {int, sequence of int, None}, optional Axis or axes along which the medians are computed. The default is to compute the median along a flattened version of the array. A sequence of axes is supported since version 1.9.0. out : ndarray, optional Alternative output array in which to place the result. It must have the same shape and buffer length as the expected output, but the type (of the output) will be cast if necessary. overwrite_input : bool, optional If True, then allow use of memory of input array a for calculations. The input array will be modified by the call to median. This will save memory when you do not need to preserve the contents of the input array. Treat the input as undefined, but it will probably be fully or partially sorted. Default is False. If overwrite_input is True and a is not already an ndarray, an error will be raised. keepdims : bool, optional If this is set to True, the axes which are reduced are left in the result as dimensions with size one. With this option, the result will broadcast correctly against the original arr. New in version 1.9.0.

Returns:

median : ndarray A new array holding the result. If the input contains integers or floats smaller than float64, then the output data-type is np.float64. Otherwise, the data-type of the output is the same as that of the input. If out is specified, that array is returned instead.

See also

mean, percentile

Notes

Given a vector V of length N, the median of V is the middle value of a sorted copy of V, V_sorted - i e., V_sorted[(N-1)/2], when N is odd, and the average of the two middle values of V_sorted when N is even.

Examples

>>> a = np.array([[10, 7, 4], [3, 2, 1]])
>>> a
array([[10,  7,  4],
       [ 3,  2,  1]])
>>> np.median(a)
3.5
>>> np.median(a, axis=0)
array([ 6.5,  4.5,  2.5])
>>> np.median(a, axis=1)
array([ 7.,  2.])
>>> m = np.median(a, axis=0)
>>> out = np.zeros_like(m)
>>> np.median(a, axis=0, out=m)
array([ 6.5,  4.5,  2.5])
>>> m
array([ 6.5,  4.5,  2.5])
>>> b = a.copy()
>>> np.median(b, axis=1, overwrite_input=True)
array([ 7.,  2.])
>>> assert not np.all(a==b)
>>> b = a.copy()
>>> np.median(b, axis=None, overwrite_input=True)
3.5
>>> assert not np.all(a==b)

min(axis=None, out=None, keepdims=False)¶

Return the minimum along a given axis.

Refer to numpy.amin for full documentation.

See also

numpy.amin

equivalent function

nansum(axis=None, out=None, keepdims=False)¶

newbyteorder(new_order='S')¶

Return the array with the same data viewed with a different byte order.

Equivalent to:

arr.view(arr.dtype.newbytorder(new_order))

Changes are also made in all fields and sub-arrays of the array data type.

Parameters:

new_order : string, optional Byte order to force; a value from the byte order specifications below. new_order codes can be any of: ‘S’ - swap dtype from current to opposite endian {‘<’, ‘L’} - little endian {‘>’, ‘B’} - big endian {‘=’, ‘N’} - native order {‘|’, ‘I’} - ignore (no change to byte order) The default value (‘S’) results in swapping the current byte order. The code does a case-insensitive check on the first letter of new_order for the alternatives above. For example, any of ‘B’ or ‘b’ or ‘biggish’ are valid to specify big-endian.

Returns:

new_arr : array New array object with the dtype reflecting given change to the byte order.

nonzero()¶

Return the indices of the elements that are non-zero.

Refer to numpy.nonzero for full documentation.

See also

numpy.nonzero

equivalent function

override_unit(unit, parse_strict='raise')[source]¶

Forcefully reset the unit of these data

Use of this method is discouraged in favour of to(), which performs accurate conversions from one unit to another. The method should really only be used when the original unit of the array is plain wrong.

Parameters:	unit : Unit, str the unit to force onto this array
Raises:	ValueError : if a str cannot be parsed as a valid unit

pad(pad_width, **kwargs)[source]¶

Pad this series to a new size

Parameters:	pad_width : int, pair of ints number of samples by which to pad each end of the array. Single int to pad both ends by the same amount, or (before, after) tuple to give uneven padding **kwargs : see numpy.pad() for kwarg documentation
Returns:	series : Series the padded version of the input

See also

numpy.pad

for details on the underlying functionality

partition(kth, axis=-1, kind='introselect', order=None)¶

Rearranges the elements in the array in such a way that value of the element in kth position is in the position it would be in a sorted array. All elements smaller than the kth element are moved before this element and all equal or greater are moved behind it. The ordering of the elements in the two partitions is undefined.

New in version 1.8.0.

Parameters:

kth : int or sequence of ints Element index to partition by. The kth element value will be in its final sorted position and all smaller elements will be moved before it and all equal or greater elements behind it. The order all elements in the partitions is undefined. If provided with a sequence of kth it will partition all elements indexed by kth of them into their sorted position at once. axis : int, optional Axis along which to sort. Default is -1, which means sort along the last axis. kind : {‘introselect’}, optional Selection algorithm. Default is ‘introselect’. order : str or list of str, optional When a is an array with fields defined, this argument specifies which fields to compare first, second, etc. A single field can be specified as a string, and not all fields need be specified, but unspecified fields will still be used, in the order in which they come up in the dtype, to break ties.

See also

numpy.partition

Return a parititioned copy of an array.

argpartition

Indirect partition.

sort

Full sort.

Notes

See np.partition for notes on the different algorithms.

Examples

>>> a = np.array([3, 4, 2, 1])
>>> a.partition(a, 3)
>>> a
array([2, 1, 3, 4])

>>> a.partition((1, 3))
array([1, 2, 3, 4])

percentile(percentile)[source]¶

Calculate a given spectral percentile for this Spectrogram.

Parameters:	percentile : float percentile (0 - 100) of the bins to compute
Returns:	spectrum : FrequencySeries the given percentile FrequencySeries calculated from this SpectralVaraicence

plot(**kwargs)[source]¶

Plot the data for this Spectrogram

prepend(other, gap='raise', inplace=True, pad=0.0, resize=True)[source]¶

Connect another series onto the start of the current one.

Parameters:

other : Series another series of the same type as this one gap : str, optional, default: 'raise' action to perform if there’s a gap between the other series and this one. One of 'raise' - raise an Exception 'ignore' - remove gap and join data 'pad' - pad gap with zeros inplace : bool, optional, default: True perform operation in-place, modifying current series, otherwise copy data and return new series Warning inplace prepend bypasses the reference check in numpy.ndarray.resize, so be carefully to only use this for arrays that haven’t been sharing their memory! pad : float, optional, default: 0.0 value with which to pad discontiguous Series resize : bool, optional, default: True

Returns:

series : TimeSeries time-series containing joined data sets

prod(axis=None, dtype=None, out=None, keepdims=False)¶

Return the product of the array elements over the given axis

Refer to numpy.prod for full documentation.

See also

numpy.prod

equivalent function

ptp(axis=None, out=None)¶

Peak to peak (maximum - minimum) value along a given axis.

Refer to numpy.ptp for full documentation.

See also

numpy.ptp

equivalent function

put(indices, values, mode='raise')¶

Set a.flat[n] = values[n] for all n in indices.

Refer to numpy.put for full documentation.

See also

numpy.put

equivalent function

ratio(operand)[source]¶

Calculate the ratio of this Spectrogram against a reference

Parameters:	operand : str, FrequencySeries, Quantity FrequencySeries or Quantity to weight against, or one of 'mean' : weight against the mean of each spectrum in this Spectrogram 'median' : weight against the median of each spectrum in this Spectrogram
Returns:	spectrogram : Spectrogram a new Spectrogram

ravel([order])¶

Return a flattened array.

Refer to numpy.ravel for full documentation.

See also

numpy.ravel

equivalent function

ndarray.flat

a flat iterator on the array.

read(*args, **kwargs)¶

Read in data

The arguments passed to this method depend on the format

The available built-in formats are:

Format	Read	Write	Auto-identify
hdf	Yes	No	No
hdf5	Yes	Yes	Yes

repeat(repeats, axis=None)¶

Repeat elements of an array.

Refer to numpy.repeat for full documentation.

See also

numpy.repeat

equivalent function

reshape(shape, order='C')¶

Returns an array containing the same data with a new shape.

Refer to numpy.reshape for full documentation.

See also

numpy.reshape

equivalent function

resize(new_shape, refcheck=True)¶

Change shape and size of array in-place.

Parameters:	new_shape : tuple of ints, or n ints Shape of resized array. refcheck : bool, optional If False, reference count will not be checked. Default is True.
Returns:	None :
Raises:	ValueError : If a does not own its own data or references or views to it exist, and the data memory must be changed. SystemError : If the order keyword argument is specified. This behaviour is a bug in NumPy.

See also

resize

Return a new array with the specified shape.

Notes

This reallocates space for the data area if necessary.

Only contiguous arrays (data elements consecutive in memory) can be resized.

The purpose of the reference count check is to make sure you do not use this array as a buffer for another Python object and then reallocate the memory. However, reference counts can increase in other ways so if you are sure that you have not shared the memory for this array with another Python object, then you may safely set refcheck to False.

Examples

Shrinking an array: array is flattened (in the order that the data are stored in memory), resized, and reshaped:

>>> a = np.array([[0, 1], [2, 3]], order='C')
>>> a.resize((2, 1))
>>> a
array([[0],
       [1]])

>>> a = np.array([[0, 1], [2, 3]], order='F')
>>> a.resize((2, 1))
>>> a
array([[0],
       [2]])

Enlarging an array: as above, but missing entries are filled with zeros:

>>> b = np.array([[0, 1], [2, 3]])
>>> b.resize(2, 3) # new_shape parameter doesn't have to be a tuple
>>> b
array([[0, 1, 2],
       [3, 0, 0]])

Referencing an array prevents resizing...

>>> c = a
>>> a.resize((1, 1))
Traceback (most recent call last):
...
ValueError: cannot resize an array that has been referenced ...

Unless refcheck is False:

>>> a.resize((1, 1), refcheck=False)
>>> a
array([[0]])
>>> c
array([[0]])

round(decimals=0, out=None)¶

Return a with each element rounded to the given number of decimals.

Refer to numpy.around for full documentation.

See also

numpy.around

equivalent function

searchsorted(v, side='left', sorter=None)¶

Find indices where elements of v should be inserted in a to maintain order.

For full documentation, see numpy.searchsorted

See also

numpy.searchsorted

equivalent function

setfield(val, dtype, offset=0)¶

Put a value into a specified place in a field defined by a data-type.

Place val into a‘s field defined by dtype and beginning offset bytes into the field.

Parameters:	val : object Value to be placed in field. dtype : dtype object Data-type of the field in which to place val. offset : int, optional The number of bytes into the field at which to place val.
Returns:	None :

See also

getfield

Examples

>>> x = np.eye(3)
>>> x.getfield(np.float64)
array([[ 1.,  0.,  0.],
       [ 0.,  1.,  0.],
       [ 0.,  0.,  1.]])
>>> x.setfield(3, np.int32)
>>> x.getfield(np.int32)
array([[3, 3, 3],
       [3, 3, 3],
       [3, 3, 3]])
>>> x
array([[  1.00000000e+000,   1.48219694e-323,   1.48219694e-323],
       [  1.48219694e-323,   1.00000000e+000,   1.48219694e-323],
       [  1.48219694e-323,   1.48219694e-323,   1.00000000e+000]])
>>> x.setfield(np.eye(3), np.int32)
>>> x
array([[ 1.,  0.,  0.],
       [ 0.,  1.,  0.],
       [ 0.,  0.,  1.]])

setflags(write=None, align=None, uic=None)¶

Set array flags WRITEABLE, ALIGNED, and UPDATEIFCOPY, respectively.

These Boolean-valued flags affect how numpy interprets the memory area used by a (see Notes below). The ALIGNED flag can only be set to True if the data is actually aligned according to the type. The UPDATEIFCOPY flag can never be set to True. The flag WRITEABLE can only be set to True if the array owns its own memory, or the ultimate owner of the memory exposes a writeable buffer interface, or is a string. (The exception for string is made so that unpickling can be done without copying memory.)

Parameters:	write : bool, optional Describes whether or not a can be written to. align : bool, optional Describes whether or not a is aligned properly for its type. uic : bool, optional Describes whether or not a is a copy of another “base” array.

Notes

Array flags provide information about how the memory area used for the array is to be interpreted. There are 6 Boolean flags in use, only three of which can be changed by the user: UPDATEIFCOPY, WRITEABLE, and ALIGNED.

WRITEABLE (W) the data area can be written to;

ALIGNED (A) the data and strides are aligned appropriately for the hardware (as determined by the compiler);

UPDATEIFCOPY (U) this array is a copy of some other array (referenced by .base). When this array is deallocated, the base array will be updated with the contents of this array.

All flags can be accessed using their first (upper case) letter as well as the full name.

Examples

>>> y
array([[3, 1, 7],
       [2, 0, 0],
       [8, 5, 9]])
>>> y.flags
  C_CONTIGUOUS : True
  F_CONTIGUOUS : False
  OWNDATA : True
  WRITEABLE : True
  ALIGNED : True
  UPDATEIFCOPY : False
>>> y.setflags(write=0, align=0)
>>> y.flags
  C_CONTIGUOUS : True
  F_CONTIGUOUS : False
  OWNDATA : True
  WRITEABLE : False
  ALIGNED : False
  UPDATEIFCOPY : False
>>> y.setflags(uic=1)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ValueError: cannot set UPDATEIFCOPY flag to True

sort(axis=-1, kind='quicksort', order=None)¶

Sort an array, in-place.

Parameters:

axis : int, optional Axis along which to sort. Default is -1, which means sort along the last axis. kind : {‘quicksort’, ‘mergesort’, ‘heapsort’}, optional Sorting algorithm. Default is ‘quicksort’. order : str or list of str, optional When a is an array with fields defined, this argument specifies which fields to compare first, second, etc. A single field can be specified as a string, and not all fields need be specified, but unspecified fields will still be used, in the order in which they come up in the dtype, to break ties.

See also

numpy.sort

Return a sorted copy of an array.

argsort

Indirect sort.

lexsort

Indirect stable sort on multiple keys.

searchsorted

Find elements in sorted array.

partition

Partial sort.

Notes

See sort for notes on the different sorting algorithms.

Examples

>>> a = np.array([[1,4], [3,1]])
>>> a.sort(axis=1)
>>> a
array([[1, 4],
       [1, 3]])
>>> a.sort(axis=0)
>>> a
array([[1, 3],
       [1, 4]])

Use the order keyword to specify a field to use when sorting a structured array:

>>> a = np.array([('a', 2), ('c', 1)], dtype=[('x', 'S1'), ('y', int)])
>>> a.sort(order='y')
>>> a
array([('c', 1), ('a', 2)],
      dtype=[('x', '|S1'), ('y', '<i4')])

squeeze(axis=None)¶

Remove single-dimensional entries from the shape of a.

Refer to numpy.squeeze for full documentation.

See also

numpy.squeeze

equivalent function

std(axis=None, dtype=None, out=None, ddof=0, keepdims=False)¶

Returns the standard deviation of the array elements along given axis.

Refer to numpy.std for full documentation.

See also

numpy.std

equivalent function

sum(axis=None, dtype=None, out=None, keepdims=False)¶

Return the sum of the array elements over the given axis.

Refer to numpy.sum for full documentation.

See also

numpy.sum

equivalent function

swapaxes(axis1, axis2)¶

Return a view of the array with axis1 and axis2 interchanged.

Refer to numpy.swapaxes for full documentation.

See also

numpy.swapaxes

equivalent function

take(indices, axis=None, out=None, mode='raise')¶

Return an array formed from the elements of a at the given indices.

Refer to numpy.take for full documentation.

See also

numpy.take

equivalent function

to(unit, equivalencies=[])¶

Returns a new Quantity object with the specified units.

Parameters:

unit : UnitBase instance, str An object that represents the unit to convert to. Must be an UnitBase object or a string parseable by the units package. equivalencies : list of equivalence pairs, optional A list of equivalence pairs to try if the units are not directly convertible. See Equivalencies. If not provided or [], class default equivalencies will be used (none for Quantity, but may be set for subclasses) If None, no equivalencies will be applied at all, not even any set globally or within a context.

to_hdf5(*args, **kwargs)[source]¶

Convert this array to a h5py.Dataset.

This method has been deprecated in favour of the unified I/O method:

Class.write(..., format=’hdf5’)

tobytes(order='C')¶

Construct Python bytes containing the raw data bytes in the array.

Constructs Python bytes showing a copy of the raw contents of data memory. The bytes object can be produced in either ‘C’ or ‘Fortran’, or ‘Any’ order (the default is ‘C’-order). ‘Any’ order means C-order unless the F_CONTIGUOUS flag in the array is set, in which case it means ‘Fortran’ order.

New in version 1.9.0.

Parameters:	order : {‘C’, ‘F’, None}, optional Order of the data for multidimensional arrays: C, Fortran, or the same as for the original array.
Returns:	s : bytes Python bytes exhibiting a copy of a‘s raw data.

Examples

>>> x = np.array([[0, 1], [2, 3]])
>>> x.tobytes()
b'\x00\x00\x00\x00\x01\x00\x00\x00\x02\x00\x00\x00\x03\x00\x00\x00'
>>> x.tobytes('C') == x.tobytes()
True
>>> x.tobytes('F')
b'\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\x00\x00\x00'

tofile(fid, sep="", format="%s")¶

Write array to a file as text or binary (default).

Data is always written in ‘C’ order, independent of the order of a. The data produced by this method can be recovered using the function fromfile().

Parameters:	fid : file or str An open file object, or a string containing a filename. sep : str Separator between array items for text output. If “” (empty), a binary file is written, equivalent to file.write(a.tobytes()). format : str Format string for text file output. Each entry in the array is formatted to text by first converting it to the closest Python type, and then using “format” % item.

Notes

This is a convenience function for quick storage of array data. Information on endianness and precision is lost, so this method is not a good choice for files intended to archive data or transport data between machines with different endianness. Some of these problems can be overcome by outputting the data as text files, at the expense of speed and file size.

tolist()¶

Return the array as a (possibly nested) list.

Return a copy of the array data as a (nested) Python list. Data items are converted to the nearest compatible Python type.

Parameters:	none :
Returns:	y : list The possibly nested list of array elements.

Notes

The array may be recreated, a = np.array(a.tolist()).

Examples

>>> a = np.array([1, 2])
>>> a.tolist()
[1, 2]
>>> a = np.array([[1, 2], [3, 4]])
>>> list(a)
[array([1, 2]), array([3, 4])]
>>> a.tolist()
[[1, 2], [3, 4]]

tostring(order='C')[source]¶

Construct Python bytes containing the raw data bytes in the array.

Constructs Python bytes showing a copy of the raw contents of data memory. The bytes object can be produced in either ‘C’ or ‘Fortran’, or ‘Any’ order (the default is ‘C’-order). ‘Any’ order means C-order unless the F_CONTIGUOUS flag in the array is set, in which case it means ‘Fortran’ order.

This function is a compatibility alias for tobytes. Despite its name it returns bytes not strings.

Parameters:	order : {‘C’, ‘F’, None}, optional Order of the data for multidimensional arrays: C, Fortran, or the same as for the original array.
Returns:	s : bytes Python bytes exhibiting a copy of a‘s raw data.

Examples

>>> x = np.array([[0, 1], [2, 3]])
>>> x.tobytes()
b'\x00\x00\x00\x00\x01\x00\x00\x00\x02\x00\x00\x00\x03\x00\x00\x00'
>>> x.tobytes('C') == x.tobytes()
True
>>> x.tobytes('F')
b'\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\x00\x00\x00'

trace(offset=0, axis1=0, axis2=1, dtype=None, out=None)¶

Return the sum along diagonals of the array.

Refer to numpy.trace for full documentation.

See also

numpy.trace

equivalent function

transpose(*axes)¶

Returns a view of the array with axes transposed.

For a 1-D array, this has no effect. (To change between column and row vectors, first cast the 1-D array into a matrix object.) For a 2-D array, this is the usual matrix transpose. For an n-D array, if axes are given, their order indicates how the axes are permuted (see Examples). If axes are not provided and a.shape = (i[0], i[1], ... i[n-2], i[n-1]), then a.transpose().shape = (i[n-1], i[n-2], ... i[1], i[0]).

Parameters:	axes : None, tuple of ints, or n ints None or no argument: reverses the order of the axes. tuple of ints: i in the j-th place in the tuple means a‘s i-th axis becomes a.transpose()‘s j-th axis. n ints: same as an n-tuple of the same ints (this form is intended simply as a “convenience” alternative to the tuple form)
Returns:	out : ndarray View of a, with axes suitably permuted.

See also

ndarray.T

Array property returning the array transposed.

Examples

>>> a = np.array([[1, 2], [3, 4]])
>>> a
array([[1, 2],
       [3, 4]])
>>> a.transpose()
array([[1, 3],
       [2, 4]])
>>> a.transpose((1, 0))
array([[1, 3],
       [2, 4]])
>>> a.transpose(1, 0)
array([[1, 3],
       [2, 4]])

update(other, inplace=True)[source]¶

Update this series by appending new data from an other and dropping the same amount of data off the start.

This is a convenience method that just calls append with resize=False.

value_at(x, y)[source]¶

Return the value of this Series at the given (x, y) coordinates

Parameters:	x : float, Quantity the xindex value at which to search x : float, Quantity the yindex value at which to search
Returns:	z : Quantity the value of this Series at the given coordinates

var(axis=None, dtype=None, out=None, ddof=0, keepdims=False)¶

Returns the variance of the array elements, along given axis.

Refer to numpy.var for full documentation.

See also

numpy.var

equivalent function

variance(bins=None, low=None, high=None, nbins=500, log=False, norm=False, density=False)[source]¶

Calculate the SpectralVariance of this Spectrogram.

Parameters:

bins : ndarray, optional, default None array of histogram bin edges, including the rightmost edge low : float, optional, default: None left edge of lowest amplitude bin, only read if bins is not given high : float, optional, default: None right edge of highest amplitude bin, only read if bins is not given nbins : int, optional, default: 500 number of bins to generate, only read if bins is not given log : bool, optional, default: False calculate amplitude bins over a logarithmic scale, only read if bins is not given norm : bool, optional, default: False normalise bin counts to a unit sum density : bool, optional, default: False normalise bin counts to a unit integral

Returns:

specvar : SpectralVariance 2D-array of spectral frequency-amplitude counts

See also

numpy.histogram()

for details on specifying bins and weights

view(dtype=None, type=None)¶

New view of array with the same data.

Parameters:

dtype : data-type or ndarray sub-class, optional Data-type descriptor of the returned view, e.g., float32 or int16. The default, None, results in the view having the same data-type as a. This argument can also be specified as an ndarray sub-class, which then specifies the type of the returned object (this is equivalent to setting the type parameter). type : Python type, optional Type of the returned view, e.g., ndarray or matrix. Again, the default None results in type preservation.

Notes

a.view() is used two different ways:

a.view(some_dtype) or a.view(dtype=some_dtype) constructs a view of the array’s memory with a different data-type. This can cause a reinterpretation of the bytes of memory.

a.view(ndarray_subclass) or a.view(type=ndarray_subclass) just returns an instance of ndarray_subclass that looks at the same array (same shape, dtype, etc.) This does not cause a reinterpretation of the memory.

For a.view(some_dtype), if some_dtype has a different number of bytes per entry than the previous dtype (for example, converting a regular array to a structured array), then the behavior of the view cannot be predicted just from the superficial appearance of a (shown by print(a)). It also depends on exactly how a is stored in memory. Therefore if a is C-ordered versus fortran-ordered, versus defined as a slice or transpose, etc., the view may give different results.

Examples

>>> x = np.array([(1, 2)], dtype=[('a', np.int8), ('b', np.int8)])

Viewing array data using a different type and dtype:

>>> y = x.view(dtype=np.int16, type=np.matrix)
>>> y
matrix([[513]], dtype=int16)
>>> print(type(y))
<class 'numpy.matrixlib.defmatrix.matrix'>

Creating a view on a structured array so it can be used in calculations

>>> x = np.array([(1, 2),(3,4)], dtype=[('a', np.int8), ('b', np.int8)])
>>> xv = x.view(dtype=np.int8).reshape(-1,2)
>>> xv
array([[1, 2],
       [3, 4]], dtype=int8)
>>> xv.mean(0)
array([ 2.,  3.])

Making changes to the view changes the underlying array

>>> xv[0,1] = 20
>>> print(x)
[(1, 20) (3, 4)]

Using a view to convert an array to a recarray:

>>> z = x.view(np.recarray)
>>> z.a
array([1], dtype=int8)

Views share data:

>>> x[0] = (9, 10)
>>> z[0]
(9, 10)

Views that change the dtype size (bytes per entry) should normally be avoided on arrays defined by slices, transposes, fortran-ordering, etc.:

>>> x = np.array([[1,2,3],[4,5,6]], dtype=np.int16)
>>> y = x[:, 0:2]
>>> y
array([[1, 2],
       [4, 5]], dtype=int16)
>>> y.view(dtype=[('width', np.int16), ('length', np.int16)])
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ValueError: new type not compatible with array.
>>> z = y.copy()
>>> z.view(dtype=[('width', np.int16), ('length', np.int16)])
array([[(1, 2)],
       [(4, 5)]], dtype=[('width', '<i2'), ('length', '<i2')])

write(data, *args, **kwargs)¶

Write out data

The arguments passed to this method depend on the format

The available built-in formats are:

Format	Read	Write	Auto-identify
hdf	Yes	Yes	No
hdf5	Yes	Yes	Yes

zip()[source]¶

Zip the xindex and value arrays of this Series

Returns:	stacked : 2-d numpy.ndarray The array formed by stacking the the xindex and value of this series

Examples

>>> a = Series([0, 2, 4, 6, 8], xindex=[-5, -4, -3, -2, -1])
>>> a.zip()
array([[-5.,  0.],
       [-4.,  2.],
       [-3.,  4.],
       [-2.,  6.],
       [-1.,  8.]])

zpk(zeros, poles, gain)[source]¶

Filter this Spectrogram by applying a zero-pole-gain filter

Parameters:	zeros : array-like list of zero frequencies (in Hertz) poles : array-like list of pole frequencies (in Hertz) gain : float DC gain of filter
Returns:	specgram : Spectrogram the frequency-domain filtered version of the input data

See also

Spectrogram.filter

for details on how a digital ZPK-format filter is applied

Examples

To apply a zpk filter with file poles at 100 Hz, and five zeros at 1 Hz (giving an overall DC gain of 1e-10):

>>> data2 = data.zpk([100]*5, [1]*5, 1e-10)